hidden file problem

in Genius Bar edited January 2014
Last year I tried to clone my HD using "Carbon copy cloner" and did a preference setting which I don't remember, and it displaced a few hidden files which I now see. I need to know if there is a way for me to fix this problem without reformatting and re-installing.

Files in question are:


tmp "aliase"

etc "aliase"

Now when I do a back-up with SuperDuper and use TechTool Pro I get a bitmap error message like -90., plus my computer will no longer see my printer's driver.
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